{"id":39,"date":"2016-05-04T10:11:36","date_gmt":"2016-05-04T08:11:36","guid":{"rendered":"http:\/\/vm-bioinfo-wp.toulouse.inra.fr\/?page_id=39"},"modified":"2021-12-21T11:44:26","modified_gmt":"2021-12-21T10:44:26","slug":"2011-2","status":"publish","type":"page","link":"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2011-2\/","title":{"rendered":"2011"},"content":{"rendered":"<ul>\n<li style=\"text-align: justify;\">Mohamad Fawal, Estelle Espinos, Olivier Jean-Jean &amp; Dominique Morello. Looking for the functions of RNA granules in ALK-transformed cells. 2011. BioArchitecture 1:2, pages 91-95. <a href=\"http:\/\/www.tandfonline.com\/doi\/full\/10.4161\/bioa.1.2.16269#abstract\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Vignes M,\u00a0Vandel J,\u00a0Allouche D,\u00a0Ramadan-Alban N,\u00a0Cierco-Ayrolles C,\u00a0Schiex T,\u00a0Mangin B, and\u00a0de\u00a0Givry S. Gene regulatory network reconstruction using bayesian networks, the dantzig selector, the lasso and their meta-analysis. <i>PLoS ONE<\/i>, 6(12), 2011. <a href=\"http:\/\/www.plosone.org\/article\/info:doi\/10.1371\/journal.pone.0029165\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Douaud M, Feve K, Pituello F, Gourichon D, Boitard S, et al. 2011 Epilepsy Caused by an Abnormal Alternative Splicing with Dosage Effect of the SV2A Gene in a Chicken Model. PLoS ONE 6(10): e26932. doi:10.1371\/journal.pone.0026932;<a href=\"http:\/\/www.plosone.org\/article\/info%3Adoi%2F10.1371%2Fjournal.pone.0026932\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">L. Tusell, A. Legarra, M. Garc\u00eda-Tom\u00e1s, O. Rafel, J. Ramon, and M. Piles. Genetic basis of semen traits and their relationship with growth rate in rabbit. J ANIM SCI November 18, 2011 jas.2011-4165; <a href=\"http:\/\/jas.fass.org\/content\/90\/5\/1385.long\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Villar E, <strong>Klopp C<\/strong>, <strong>Noirot C<\/strong>, Novaes E, Kirst M, Plomion C, Gion JM. RNA-Seq<br \/>\n reveals genotype-specific molecular responses to water deficit in eucalyptus. BMC Genomics. 2011 Nov 2;12(1):538. <a href=\"http:\/\/www.biomedcentral.com\/1471-2164\/12\/538\/abstract\/\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Matteo Serino, Elodie Luche, Sandra Gres, Audrey Baylac, Mathieu Berg\u00e9, Claire Cenac, Aurelie Waget, Pascale Klopp, Jason Iacovoni, <strong>Christophe Klopp<\/strong>, <strong>Jerome Mariette<\/strong>, Olivier Bouchez, Jerome Lluch, Francoise Ouarn\u00e9, Pierre Monsan, Philippe Valet, Christine Roques, Jacques Amar, Anne Bouloumi\u00e9, Vassilia Th\u00e9odorou, Remy Burcelin. : Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota. Gut 2011. gutjnl-2011-301012. <a href=\"http:\/\/gut.bmj.com\/content\/early\/2011\/11\/22\/gutjnl-2011-301012.abstract\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Amar J, Serino M, Lange C, Chabo C, Iacovoni J, Mondot S, Lepage P, <strong>Klopp C<\/strong>, <strong>Mariette J<\/strong>, Bouchez O, Perez L, Courtney M, Marre M, Klopp P, Lantieri O, Dor\u00e9 J, Charles MA, Balkau B, Burcelin R; for the D.E.S.I.R. Study Group. Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept. Diabetologia. 2011 Oct 6. <a href=\"http:\/\/www.springerlink.com\/content\/170715078p28732g\/\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Marie-Jos\u00e9e Cros, Antoine de Monte, <strong>J\u00e9r\u00f4me Mariette<\/strong>, Philippe Bardou, Benjamin Grenier-Boley, Daniel Gautheret, H\u00e9l\u00e8ne Touzet, and <strong>Christine Gaspin<\/strong>. RNAspace.org: an integrated environment for the prediction, annotation and analysis of ncRNA. RNA 2011 17 (11) <a href=\"http:\/\/rnajournal.cshlp.org\/content\/early\/2011\/09\/23\/rna.2844911\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">J Amar, M Serino, C Lange, C Chabot, O Bouchez, <strong>J Mariette<\/strong>, L Perez, M Courntey, M Marre, P Klopp, O Lantieri, J Dore, MA Charles, B Balkau, R Burcelin. Predictive value of blood bacterial DNA on the onset of type 2 diabetes from general population: 7e.11.\u00a0Journal of Hypertension 29, e116. <a href=\"http:\/\/journals.lww.com\/jhypertension\/Citation\/2011\/06001\/Predictive_Value_of_Blood_Bacterial_Dna_on_the.288.aspx\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Busset J, Cabau C, Meslin C, Pascal G. PhyleasProg: a user-oriented web server for wide evolutionary analyses. Nucleic Acids Res. 2011 Jul;39 (Web Server issue):W479-85 <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21531699\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">M Serino, E Luche, P Klopp, C Chabo, O Bouchez, <strong>C Klopp<\/strong>, <strong>J Mariette<\/strong>, J Lluch, J Iacovoni, St Mondot, P Lepage, J Dore, A Bouloumie, P Valet, R Burcelin. PO35 &#8211; Characterization of a microbiota of intestinal origin in white adipose tissue and troma vascular fraction from healthy and patients according to their BMI.\u00a0Diabetes &amp; Metabolism 37 (1), A32-A32. <a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1262363611706139\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">J Amar, C Chabo, C Lange, M Serino, J Iacovoni, S Mondo, P Lepage, <strong>J Mariette<\/strong>, O Lantieri, L Perez, M Marre, P Klopp, M Courtney, MA Charles, B Balkau, R Burcelin. O85 LA concentration sanguine d&#8217;ADN bact\u00e9rien pr\u00e9dit la survenue du diab\u00e8te en population g\u00e9n\u00e9rale.\u00a0Diabetes &amp; Metabolism 37 (1), A21-A21. <a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1262363611705730\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Toro MA, Garcia-Cortes LA, Lefarra A. A note on the rationale for estimating genealogical coancestry from molecular markers. Genetics Selection Evolution 2011, 43:27.<\/li>\n<li style=\"text-align: justify;\">Vitezica, Z.G., Aguilar I., Misztal, I., Legarra, A., 2011. Bias in genomic predictions for populations under selection. Genet. Res., 93: 357-366.<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21767459\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Tussell L, Legarra A, Garcia-Tomas M, Rafel O, Ramon J, Piles M. Different ways to model biological relationships between fertility and PH of the semen in rabbits. J. Anim. Sci 2011. 89:1294-1303<\/li>\n<li style=\"text-align: justify;\"><strong>Mariette J<\/strong>, <strong>Noirot C<\/strong>, <strong>Klopp C<\/strong>. Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool. BMC Research Notes 2011, 4:149. <a href=\"http:\/\/www.biomedcentral.com\/1756-0500\/4\/149\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">A. Legarra, F. Calenge, P. Mariani, P. Velge and C. Beaumont. Use of a reduced set of single nucleotide polymorphisms for genetic evaluation of resistance to Salmonella carrier state in laying hens. Poult Sci 2011. 90:731-736. doi:10.3382\/ps.2010-01260. <a href=\"http:\/\/ps.fass.org\/cgi\/content\/abstract\/90\/4\/731\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Phok, K, Moisan, A, Rinaldi D, Brucato, N, Carpousis, AJ, <strong>Gaspin, C<\/strong>, and Clouet-d&#8217;Orval, B. Identification of CRISPR and riboswitch related RNAs among novel non-coding RNAs of the euryarchaeon Pyrococcus abyssi. BMC Genomics 2011, 12:312doi:10.1186\/1471-2164-12-312. <a href=\"http:\/\/www.biomedcentral.com\/1471-2164\/12\/312\" target=\"external-link-new-window\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Matthias Mac\u00e9, St\u00e9phane D. Galiacy, Ang\u00e9lique Erraud, Jos\u00e9 Enrique Mej\u00eda, Heather Etchevers, Mich\u00e8le Allouche, Laurence Desjardins, Patrick Calvas, Fran\u00e7ois Malecaze. Comparative transcriptome and network biology analyses demonstrate antiproliferative and hyperapoptotic phenotypes in human keratoconus corneas. IOVS June 15, 2011 iovs.10-70981. <a href=\"http:\/\/www.iovs.org\/content\/early\/2011\/06\/14\/iovs.10-70981.abstract\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Saneyoshi Ueno1, <strong>Christophe Klopp<\/strong>, <strong>C\u00e9line Noirot<\/strong>, Val\u00e9rie L\u00e9ger, Elodie Prince, Antoine Kremer, Christophe Plomion, Gr\u00e9goire Le Provost. Detection of genes involved in bud phenology in sessile oak (Quercus petraea Matt. Liebl) combining digital expression analysis and Q-PCR. BMC Proceedings 2011, 5(Suppl 7):P20. <a href=\"http:\/\/www.biomedcentral.com\/content\/pdf\/1753-6561-5-S7-P20.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Alice Aarnink, Pol-Andr\u00e9 Apoil, Ichiro Takahashi, Naoki Osada and Antoine Blancher. Influence of the MHC genotype on the progression of experimental SIV infection in the Mauritian cynomolgus macaque. Immunogenetics, Volume 23, Number 5, 267-274, DOI:10.1007\/s00251-010-0504-6. <a href=\"http:\/\/www.springerlink.com\/content\/4706570q50580506\/fulltext.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Baloche G., Larroque H., Astruc J. M., Babilliot J. M., Boscher M. Y., Boulenc P., Chantry-Darmon C., Boissieu C., Fr\u00e9geat G., Giral-Viala B., Guibert P., Lagriffoul G., Moreno C., Panis P., Robert-Grani\u00e9 C., Sall\u00e9 G., Legarra A., Barillet F., 2011. Work in progress on genomic evaluation using BGLUP in French Lacaune dairy sheep breed. 62nd Annual Meeting EAAP, Stavanger, Norv\u00e8ge, 29 Aout &#8211; 2 Septembre 2011, Session 49, Theatre 6, Abstract p.345<\/li>\n<li style=\"text-align: justify;\">Douaud M., Feve K., Pituello F., Gourichon D., Boitard S., Leguern E., Coquerelle G., Vieaud A., Batini C., Naquet R., Vignal A., Tixier-Boichard M., Pitel F.: Epilepsy Caused by an Abnormal Alternative Splicing with Dosage Effect of the SV2A Gene in a Chicken Model. PLoS One 2011, 6:e26932, doi:10.1371\/journal.pone.0026932. <a href=\"http:\/\/www.plosone.org\/article\/info%3Adoi%2F10.1371%2Fjournal.pone.0026932\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Mohamad Fawal, Estelle Espinos, Olivier Jean-Jean &amp; Dominique Morello. Looking for the functions of RNA granules in ALK-transformed cells. 2011. BioArchitecture 1:2, pages 91-95. see Vignes M,\u00a0Vandel J,\u00a0Allouche D,\u00a0Ramadan-Alban N,\u00a0Cierco-Ayrolles C,\u00a0Schiex T,\u00a0Mangin B, and\u00a0de\u00a0Givry&#46;&#46;&#46;<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":21,"menu_order":9,"comment_status":"closed","ping_status":"closed","template":"page-templates\/child-menu.php","meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>2011 - genotoul-bioinfo-UPDATE<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2011-2\/\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2011-2\/\",\"url\":\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2011-2\/\",\"name\":\"2011 - 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