{"id":35,"date":"2016-05-04T10:09:44","date_gmt":"2016-05-04T08:09:44","guid":{"rendered":"http:\/\/vm-bioinfo-wp.toulouse.inra.fr\/?page_id=35"},"modified":"2021-12-21T11:44:15","modified_gmt":"2021-12-21T10:44:15","slug":"2013-2","status":"publish","type":"page","link":"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2013-2\/","title":{"rendered":"2013"},"content":{"rendered":"<ul>\n<li style=\"text-align: justify;\">Besnard G, Christin P-A, Mal\u00e9 P-J G, Coissac E, Ralimanana H, and Vorontsova MS, Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar, Ann Bot (2013) 112 (6): 1057-1066. doi:10.1093\/aob\/mct174. <a href=\"http:\/\/aob.oxfordjournals.org\/content\/112\/6\/1057.full\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Canales J, Bautista R, Label P, G\u00f3mez-Maldonado J, Lesur I, Fern\u00e1ndez-Pozo N, Rueda-L\u00f3pez M, Guerrero-Fern\u00e1ndez D, Castro-Rodr\u00edguez V, Benzekri H, Ca\u00f1as RA, Guevara MA, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, <strong>Noirot C<\/strong>, <strong>Klopp C<\/strong>, Reymond I, Garc\u00eda-Guti\u00e9rrez A, Trontin JF, Lelu-Walter MA, Miguel C, Cervera MT, Cant\u00f3n FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, C\u00e1novas FM.De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology. Plant Biotechnol J. 2013 Nov 21. doi: 10.1111\/pbi.12136. <a href=\"http:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/pbi.12136\/abstract;jsessionid=40F968EAC060C5B16DF50574FF560056.f01t03?systemMessage=Wiley+Online+Library+will+be+disrupted+on+7+December+from+10%3A00-15%3A00+BST+%2805%3A00-10%3A00+EDT%29+for+essential+maintenance\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Elsen JM, de\u00a0Givry S, Katsirelos G, and Shumbusho F. Optimizing the reference population in a genomic selection design. In <i>CP-13 workshop on Constraint Based Methods for Bioinformatics<\/i>, pages 37-46, Uppsala, Sweden, 2013.<\/li>\n<li style=\"text-align: justify;\">de\u00a0Givry S, Prestwich S, and O&#8217;Sullivan B. Dead-End Elimination for Weighted CSP. In <i>Proc. of CP-13<\/i>, pages 263-272, Uppsala, Sweden, 2013. <a href=\"http:\/\/link.springer.com\/chapter\/10.1007%2F978-3-642-40627-0_22\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Thepot S,\u00a0Ben Abdelali R,\u00a0Chevret S,\u00a0Renneville A,\u00a0Beyne Rauzy O,\u00a0Prebet T,\u00a0Park S,\u00a0Stamatoullas A,\u00a0Guerci-Bresler A,\u00a0Cheze S,\u00a0Tertian G,\u00a0Choufi B, Legros L,\u00a0Bastie JN, Delaunay J,\u00a0Wattel E,\u00a0Dreyfus, Vey N,\u00a0Preudhomme C,\u00a0Fenaux P, and\u00a0Gardin C. Prognostic Factors Of Response and Survival To Azacitidine (AZA) \u00b1 EPO In RBC Transfusion Dependent (TD) IPSS Low and Int-1 (LR) MDS Resistant To EPO, With Particular Emphasis Of Genetic Lesions: A Study By The GFM. ASH (American Society of Hematology), 2013. <a href=\"https:\/\/ash.confex.com\/ash\/2013\/webprogram\/Paper61124.html\" target=\"_blank\" rel=\"noopener noreferrer\">see <\/a><\/li>\n<li style=\"text-align: justify;\">Girardot M, Hirasawa R, Kacem S, Fritsch L, Pontis J, Kota SK, Filipponi D, Fabbrizio E, Sardet C, Lohmann F, Kadam S, Ait-Si-Ali S, Feil R. PRMT5-mediated histone H4 arginine-3 symmetrical dimethylation marks chromatin at G + C-rich regions of the mouse genome. Nucleic Acids Res. 2013 Oct 3. doi: 10.1093\/nar\/gkt884. <a href=\"http:\/\/nar.oxfordjournals.org\/content\/early\/2013\/10\/03\/nar.gkt884.long\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Robic A, Faraut T, Prunier A. Pathway and genes involved in steroid hormone metabolism in male pigs: a review and update. Journal of steroid biochemistry and molecular biology. Available online 12 November 2013. doi:10.1016\/j.jsbmb.2013.11.001. <a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0960076013002318\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Faur\u00e9 R, henrissat B, Lef\u00e8vre F, Robe P, Bouchez O, <strong>Noirot C<\/strong>, Dumon C, O&#8217;Donohue M. Mining for hemicellulases in the fungus-growing termite <i>Pseudacanthotermes militaris<\/i> using functional metagenomics. Biotechnology for Biofuels. 2013, 6:78. doi:10.1186\/1754-6834-6-78. <a href=\"http:\/\/www.biotechnologyforbiofuels.com\/content\/6\/1\/78\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Traor\u00e9 S, Allouche D, Andr\u00e9 I, de Givry S, Katsirelos G, Schiex T, Barbe S. A new framework for computational protein design through cost function network optimization. Bioinformatics. 2013 Sep 1;29(17):2129-36. doi: 10.1093\/bioinformatics\/btt374. Epub 2013 Jul 10. <a href=\"http:\/\/bioinformatics.oxfordjournals.org\/content\/29\/17\/2129.abstract\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Blanc-Mathieu R, Sanchez-Ferandin S, Eyre-Walker A, Piganeau G. Organellar Inheritance in the Green Lineage: Insights from Ostreococcus tauri. Genome Biol Evol. 2013 Jan;5(8):1503-11. doi: 10.1093\/gbe\/evt106. <a href=\"http:\/\/gbe.oxfordjournals.org\/content\/5\/8\/1503.short\" target=\"_blank\" rel=\"noopener noreferrer\">See<\/a>.<\/li>\n<li style=\"text-align: justify;\">Carr\u00e9 C, Gamboa F, Cros D, Hickey JM, Gorjanc G, Manfredi E. Genetic prediction of complex traits: integrating infinitesimal and marked genetic effects. Genetica. 2013 Jun;141(4-6):239-46. doi: 10.1007\/s10709-013-9722-9. Epub 2013 May 30. <a href=\"http:\/\/link.springer.com\/article\/10.1007\/s10709-013-9722-9\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Ben C, Debell\u00e9 F, Berges H, Bellec A, Jardinaud MF, Anson P, Huguet T, Gentzbittel L, Vailleau F. MtQRRS1, an R-locus required for Medicago truncatula quantitative resistance to Ralstonia solanacearum. New Phytol. 2013 Aug;199(3):758-72. doi: 10.1111\/nph.12299. Epub 2013 May 2. <a href=\"http:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/nph.12299\/full\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">V Bourret, G Croville, <strong>J Mariette<\/strong>, <strong>C Klopp<\/strong>, O Bouchez, L Tiley, JL Gu\u00e9rin. Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells. Infection, Genetics and Evolution. 2013 May. <a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1567134813001834\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Chancerel E, Lamy JB, Lesur I, <strong>Noirot C<\/strong><b>, <\/b><strong>Klopp C<\/strong>, Ehrenmann F, Boury C, Le Provost G, Label P, Lalanne C, L\u00e9ger V, Salin F, Gion JM, Plomion C. High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination.<br \/>\n BMC Biol. 2013 Apr 18;11(1):50. <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23597128\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Bouzid W, <strong>Klopp C<\/strong>, Verdenaud M, Ducancel F, V\u00e9tillard A. Profiling the venom gland transcriptome of Tetramorium bicarinatum (Hymenoptera: Formicidae): The first transcriptome analysis of an ant species. Toxicon. 2013 Apr 11. doi:pii: S0041-0101(13)00105-0. 10.1016\/j.toxicon.2013.03.010. <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23584016\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Ueno S, <strong>Klopp C<\/strong>, Lepl\u00e9 JC, Derory J, <strong>Noirot C<\/strong>, L\u00e9ger V, Prince E, Kremer A, Plomion C, Le Provost G. Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing. BMC Genomics. 2013 Apr 10;14:236. doi: 10.1186\/1471-2164-14-236. <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23575249\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Nizar Fawal, Qiang Li, Bruno Savelli, Marie Brette, Gisele Passaia, Maxime Fabre, Catherine Math\u00e9 and Christophe Dunand.\u00a0PeroxiBase: a database for large-scale evolutionary analysis of peroxidases. Nucleic Acids Res. 2013 Jan 1;41(D1):D441-4. doi: 10.1093\/nar\/gks1083. Epub 2012 Nov 24. <a href=\"http:\/\/nar.oxfordjournals.org\/content\/41\/D1\/D441.short\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Colombani C, Legarra A, Fritz S, Guillaume F, Croiseau P, Ducrocq V, Robert-Grani\u00e9 C. Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesC? methods for genomic selection in French Holstein and Montb\u00e9liarde breeds. J Dairy Sci. 2013 Jan;96(1):575-91. doi: 10.3168\/jds.2011-5225. Epub 2012 No. <a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0022030212007965\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Hinaux H, Poulain J, Da Silva C, <strong>Noirot C<\/strong>, Jeffery WR, Casane D, R\u00e9taux S. De Novo Sequencing of Astyanax mexicanus Surface Fish and Pach\u00f3n Cavefish Transcriptomes Reveals Enrichment of Mutations in Cavefish Putative Eye Genes. PLoS One. 2013;8(1):e53553. doi: 10.1371\/journal.pone.0053553. Epub 2013 Jan 9. <a href=\"http:\/\/www.plosone.org\/article\/info%3Adoi%2F10.1371%2Fjournal.pone.0053553\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Luis Alberto Garcia-Cortes, Andres Legarra, Claude Chevalet, Miguel Angel Toro. Variance and Covariance of Actual Relationships between Relatives at One Locus.PLoS One. 2013;8(2):e57003. doi: 10.1371\/journal.pone.0057003. Epub 2013 Feb 22. <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3579841\/\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Gschloessl B, Beyne E, Audiot P, Bourguet D, Striff R. De novo transcriptomic resources for two sibling species of moths: Ostrinia nubilalis and O. scapulalis. BMC Research Notes.\u00a02013;6:73. doi:10.1186\/1756-0500-6-73. Epub 2013 Feb 28. <a href=\"http:\/\/www.biomedcentral.com\/1756-0500\/6\/73\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Baloche G, Legarra A, Sall\u00e9 G, Larroque H, Astruc JM, Robert-Grani\u00e9 C, Barillet F. Assessment of accuracy of genomic prediction for French Lacaune dairysheep. J Dairy Sci. 2014 Feb;97(2):1107-16. doi: 10.3168\/jds.2013-7135. <a href=\"http:\/\/www.journalofdairyscience.org\/article\/S0022-0302%2813%2900817-5\/abstract\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Vitezica ZG, Varona L, Legarra A. On the additive and dominant variance and covariance of individuals within the genomic selection scope. Genetics. 2013 Dec;195(4):1223-30. <a href=\"http:\/\/www.genetics.org\/content\/195\/4\/1223.long\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Bonhomme M, Andr\u00e9 O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi JM, Briskine R, Mudge J, Deb\u00e9ll\u00e9 F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Nayel ML, Young ND, Jacquet C. High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches. New Phytol. 2013 Nov 28.<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=Bonhomme%2C+F-box\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Fariello MI, Boitard S, Naya H, SanCristobal M, Servin B. Detecting signatures of selection through haplotype differentiation among hierarchically structured populations. Genetics. 2013 Mar;193(3):929-41. <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23307896\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li style=\"text-align: justify;\">Auclair S, Rossetti R, Meslin C, Monestier O, Di Pasquale E, Pascal G, Persani L, Fabre S. Positive selection in bone morphogenetic protein 15 targets a natural mutation associated with primary ovarian insufficiency in human. PLoS One. 2013 Oct 16;8(10):e78199. doi: 10.1371\/journal.pone.0078199. eCollection 2013. <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24147118\" target=\"_blank\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Besnard G, Christin P-A, Mal\u00e9 P-J G, Coissac E, Ralimanana H, and Vorontsova MS, Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar, Ann Bot (2013) 112 (6): 1057-1066. doi:10.1093\/aob\/mct174. see&#46;&#46;&#46;<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":21,"menu_order":7,"comment_status":"closed","ping_status":"closed","template":"page-templates\/child-menu.php","meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>2013 - genotoul-bioinfo-UPDATE<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2013-2\/\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2013-2\/\",\"url\":\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2013-2\/\",\"name\":\"2013 - 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