{"id":3157,"date":"2019-03-05T16:24:04","date_gmt":"2019-03-05T15:24:04","guid":{"rendered":"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/?page_id=3157"},"modified":"2021-12-21T11:41:57","modified_gmt":"2021-12-21T10:41:57","slug":"2018-2","status":"publish","type":"page","link":"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/2018-2\/","title":{"rendered":"2018"},"content":{"rendered":"
    \n
  1. Medina, C., da Rocha, M., Magliano, M., Raptopoulo, A., Marteu, N., Lebrigand, K., Abad, P., Favery, B., and Jaubert-Possamai, S.. Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita. BMC Genomics 19, 943. doi:10.1186\/s12864-018-5296-3. see<\/a><\/li>\n
  2. Marc Krasovec, Sophie Sanchez-Brosseau, Nigel Grimsley Gwenael Piganeau; Spontaneous mutation rate as a source of diversity for improving desirable traits in cultured microalgae; Algal Research Volume 35, November 2018, Pages 85-90; doi : 10.1016\/j.algal.2018.08.003. see<\/a><\/li>\n
  3. Marc Krasovec, Emmelien Vancaester, Stephane Rombauts, Fran\u00e7ois Bucchini, Sheree Yau, Claire Hemon, Hugo Lebredonchel, Nigel Grimsley, Herv\u00e9 Moreau, Sophie Sanchez-Brosseau, Klaas Vandepoele, Gwenael Piganeau; Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage; Genome Biology and Evolution, Volume 10, Issue 9, 1 September 2018, Pages 2347\u20132365, doi : 10.1093\/gbe\/evy167. see<\/a><\/li>\n
  4. Berline Fopa Fomeju, Dominique Brunel, Aur\u00e9lie B\u00e9rard, Jean-Baptiste Rivoal, Philippe Gallois, Marie-Christine Le Paslier, Jean-Pierre Bouverat-Bernier; Quick and efficient approach to develop genomic resources in orphan species: application in Lavandula angustifolia; bioRxiv; doi: https:\/\/doi.org\/10.1101\/381400 . see<\/a><\/li>\n
  5. Aimeric Teyssier, Luc Lens, Erik Matthysen and Jo\u00ebl White; Dynamics of Gut Microbiota Diversity During the Early Development of an Avian Host: Evidence From a Cross-Foster Experiment; Front. Microbiol., 09 July 2018; doi : 10.3389\/fmicb.2018.01524. see<\/a><\/li>\n
  6. Cruaud A., Groussier G., Genson G., Saun\u00e9 L., Polaszek A. & Rasplus J.-Y.; Pushing the limits of whole genome amplification: successful sequencing of RADseq library from a single microhymenopteran (Chalcidoidea, Trichogramma); PeerJ 6: e5640; doi:10.7717\/peerj.5640. see<\/a><\/li>\n
  7. Lucas Torres, Andreanna J. Welch, Catherine Zanchetta, R. Terry Chesser, Maxime Manno, C\u00e9cile Donnadieu, Vincent Bretagnolle & Eric Pante (2019) Evidence for a duplicated mitochondrial region in Audubon\u2019s shearwater based on MinION sequencing, Mitochondrial DNA Part A, 30:2, 256-263, doi: 10.1080\/24701394.2018.1484116. see<\/a><\/li>\n
  8. Zulma G. Vitezica, Antonio Reverter, William Herring and Andres Legarra; Dominance and epistatic genetic variances for litter size in pigs using genomic models; Genetics Selection Evolution 2018 50:71; doi : 10.1186\/s12711-018-0437-3. see<\/a><\/li>\n
  9. Tao Xiang, Ole Fredslund Christensen, Zulma Gladis Vitezica and Andres Legarra; Genomic Model with Correlation Between Additive and Dominance Effects; Genetics July 1, 2018 vol. 209 no. 3 711-723; doi : 10.1534\/genetics.118.301015. see<\/a><\/li>\n
  10. Pierpaolo Maisano Delser, Shannon Corrigan, Drew Duckett, Arnaud Suwalski, Michel Veuille, Serge Planes, Gavin J. P. Naylor & Stefano Mona; Demographic inferences after a range expansion can be biased: the test case of the blacktip reef shark (Carcharhinus melanopterus); Heredity; doi: 10.1038\/s41437-018-0164-0. see<\/a><\/li>\n
  11. Thibault Leroy, Yoann Anselmetti, Marie-Ka Tilak, Severine Berard, Laura Csukonyi, Maeva Gabrielli, Celine Scornavacca, Borja Mila, Christophe Thebaud, Benoit Nabholz; A bird’s white-eye view on avian sex chromosome evolution; doi: 10.1101\/505610 . see<\/a><\/li>\n
  12. Thibault Leroy , Quentin Rougemont, Jean-Luc Dupouey, Catherine Bod\u00e9n\u00e8s, C\u00e9line Lalanne, Caroline Belser, Karine Labadie, Gr\u00e9goire Le Provost, Jean-Marc Aury, Antoine Kremer, Christophe Plomion; Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers; doi: 10.1101\/246637 . see<\/a><\/li>\n
  13. Florence Nicot, Nicolas Jeanne, Alain Roulet, Caroline Lefebvre, Romain Carcenac, Maxime Manno, Martine Dubois, Nassim Kamar, S\u00e9bastien Lhomme, Florence Abravanel, Jacques Izopet; Diversity of hepatitis E virus genotype 3; doi : 10.1002\/rmv.1987. see<\/a><\/li>\n
  14. Perrier JP, Sellem E, Pr\u00e9zelin A, Gasselin M, Jouneau L, Piumi F, Al Adhami H, Weber M, Fritz S, Boichard D, Le Danvic C, Schibler L, Jammes H, Kiefer H.;A multi-scale analysis of bull sperm methylome revealed both species peculiarities and conserved tissue-specific features;BMC Genomics. 2018 May 29;19(1):404. doi: 10.1186\/s12864-018-4764-0. see<\/a><\/li>\n
  15. Pratx L, Rancurel C, Da Rocha M, Danchin EGJ, Castagnone-Sereno P, Abad P, Perfus-Barbeoch L. Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species. BMC Genomics May 3;19(1):321. doi:10.1186\/s12864-018-4686-x . see<\/a><\/li>\n
  16. Coleman R., B. Gauffre, A. Pavlova, L. Beheregaray, J. Kearns, J. Lyon, M. Sasaki, R. Leblois, C. Sgro, P. Sunnucks. 2018. Artificial barriers prevent genetic recovery of small isolated populations of a low mobility freshwater fish. Heredity 120:515\u2013532. doi: 10.1038\/s41437-017-0008-3. see<\/a><\/li>\n
  17. Ohlmann, M., Mazel, F., Chalmandrier, L., Bec, S., Coissac, E., Gielly, L., … & Thuiller, W.Mapping the imprint of biotic interactions on \u03b2\u2010diversity. Ecology letters, 21(11), 1660-1669. DOI : 10.1111\/ele.13143. see<\/a><\/li>\n
  18. Zinger, L., Taberlet, P., Schimann, H., Bonin, A., Boyer, F., De Barba, M., \u2026 & Chave, J. Body size determines soil community assembly in a tropical forest. Molecular ecology. DOI: 10.1111\/mec.14919. see<\/a><\/li>\n
  19. Ledoux J.-B., M. Frleta-Vali\u0107, S. Kipson, A. Antunes, E. Cebrian, C. Linares, P. S\u00e1nchez, R. Leblois, J. Garrabou. 2018. Postglacial range expansion shaped the spatial genetic structure in a marine habitat-forming species: implications for conservation plans in the Eastern Adriatic Sea. Journal of Biogeography 45: 2645-2657. doi:10.1111\/jbi.13461. see<\/a><\/li>\n
  20. Hivert V., R. Leblois, M. Gautier, R. Vitalis. 2018. Measuring genetic differentiation from Pool-seq data. Genetics 210 : 315-330. doi:10.1534\/genetics.118.300900. see<\/a><\/li>\n
  21. Rousset F., C. R. Beeravolu, R. Leblois. 2018. Likelihood computation and inference of demographic and mutational parameters from population genetic data under coalescent approximations. Journal de la Soci\u00e9t\u00e9 Fran\u00e7aise de Statistique 159 : 142-166.<\/li>\n
  22. Mathieu Gautier, Junichi Yamaguchi, Julien Foucaud, Anne Loiseau, Aur\u00e9lien Ausset, Benoit Facon, Bernhard Gschloessl, Jacques Lagnel, Etienne Loire, Hugues Parrinello, Dany Severac, Celine Lopez-Roques, Cecile Donnadieu, Maxime Manno, Helene Berges, Karim Gharbi, Lori Lawson-Handley, Lian-Sheng Zang, Heiko Vogel, Arnaud Estoup, Benjamin Prud\u2019homme, The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird. Current Biology, Volume 28, Issue 20. doi:10.1016\/j.cub.2018.08.023. see<\/a><\/li>\n
  23. Yann Pecrix, S. Evan Staton, Erika Sallet, Christine Lelandais-Bri\u00e8re, Sandra Moreau, S\u00e9bastien Carr\u00e8re, Thomas Blein, Marie-Fran\u00e7oise Jardinaud, David Latrasse, Mohamed Zouine, Margot Zahm, Jonathan Kreplak, Baptiste Mayjonade, Carine Satg\u00e9, Magali Perez, St\u00e9phane Cauet, William Marande, C\u00e9line Chantry-Darmon, C\u00e9line Lopez-Roques, Olivier Bouchez, Aur\u00e9lie B\u00e9rard, Fr\u00e9d\u00e9ric Debell\u00e9, St\u00e9phane Mu\u00f1os, Abdelhafid Bendahmane, H\u00e9l\u00e8ne Berg\u00e8s, Andreas Niebel, Julia Buitink, Florian Frugier, Moussa Benhamed, Martin Crespi, J\u00e9r\u00f4me Gouzy & Pascal Gamas, Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants (2018). doi:10.1038\/s41477-018-0286-7. see<\/a><\/li>\n
  24. Ogiyama, Y., Schuettengruber, B., Papadopoulos, G., Chang, J.-M. & Cavalli, G. Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development. Mol Cell (2018). doi:10.1016\/j.molcel.2018.05.032. see<\/a><\/li>\n
  25. Louise Brousseau, Paul V. A. Fine, Erwin Dreyer, Giovanni G. Vendramin, Ivan Scotti, Genomics of microgeographic adaptation in the Amazonian hyperdominant tree Eperua falcata Aubl. (Fabaceae), bioRxiv, see<\/a><\/li>\n
  26. L. Brousseau, S. Nidelet, R. Streiff, New WGS data and annotation of the heterosomal vs. autosomal localization of Ostrinia scapulalis (Lepidoptera, Crambidae) nuclear genomic scaffolds, Data in Brief, doi:10.1016\/j.dib.2018.08.011i see<\/a><\/li>\n
  27. N. Pierre Charrier, Marjorie Couton, Maarten J. Voordouw, Olivier Rais, Axelle Durand-Hermouet, Caroline Hervet, Olivier Plantard and Claude Rispe. Whole body transcriptomes and new insights into the biology of the tick Ixodes ricinus. Parasites & Vectors 2018 11:364. DOI: 10.1186\/s13071-018-2932-3. see<\/a><\/li>\n
  28. Cl\u00e9ment Viricel Simon de Givry Thomas Schiex Sophie Barbe. UCost Function Network-based Design of Protein-Protein Interactions: predicting changes in binding affinity. Bioinformatics, 2018. doi: see<\/a><\/li>\n
  29. Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carr\u00e8re S, Caissard JC, Couloux A, Cottret L, Aury JM, Sz\u00e9csi J, Latrasse D, Madoui MA, Fran\u00e7ois L, Fu X, Yang SH, Dubois A, Piola F, Larrieu A, Perez M, Labadie K, Perrier L, Govetto B, Labrousse Y, Villand P, Bardoux C, Boltz V, Lopez-Roques C, Heitzler P, Vernoux T, Vandenbussche M, Quesneville H, Boualem A, Bendahmane A, Liu C, Le Bris M, Salse J, Baudino S, Benhamed M, Wincker P, Bendahmane M. The Rosa genome provides new insights into the domestication of modern roses. Nat Genet. 2018 Apr 30. doi:10.1038\/s41588-018-0110-3. PubMed PMID: 29713014.see<\/a>.<\/li>\n
  30. Schroeder H, Sikora M, Gopalakrishnan S, Cassidy LM, Maisano Delser P, Sandoval Velasco M, Schraiber JG, Rasmussen S, Homburger JR, \u00c1vila-Arcos MC, Allentoft ME, Moreno-Mayar JV, Renaud G, G\u00f3mez-Carballa A, Laffoon JE, Hopkins RJA, Higham TFG, Carr RS, Schaffer WC, Day JS, Hoogland M, Salas A, Bustamante CD, Nielsen R, Bradley DG, Hofman CL, Willerslev E. Origins and genetic legacies
    \nof the Caribbean Taino. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2341-2346. doi: 10.1073\/pnas.1716839115. Epub 2018 Feb 20. PubMed PMID: 29463742; PubMed Central PMCID: PMC5877975.see.<\/li>\n
  31. Laurent B, Palaiokostas C, Spataro C, Moinard M, Zehraoui E, Houston RD, Foulongne-Oriol M. High-resolution mapping of the recombination landscape of the phytopathogen Fusarium graminearum suggests two-speed genome evolution. Mol Plant Pathol. 2018 Feb;19(2):341-354. doi: 10.1111\/mpp.12524. Epub 2017 Feb 14. PubMed PMID: 27998012.see<\/a>.<\/li>\n
  32. Segura A, Auffret P, Bibbal D, Bertoni M, Durand A, Jubelin G, K\u00e9rour\u00e9dan M, Brug\u00e8re H, Bertin Y, Forano E. Factors Involved in the Persistence of a Shiga Toxin-Producing Escherichia coli O157:H7 Strain in Bovine Feces and Gastro-Intestinal Content. Front Microbiol. 2018 Mar 9;9:375. doi:10.3389\/fmicb.2018.00375. eCollection 2018. PubMed PMID: 29593666; PubMed Central PMCID: PMC5854682.see<\/a>.<\/li>\n
  33. Teyssier A, Rouffaer LO, Saleh Hudin N, Strubbe D, Matthysen E, Lens L, White J. Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine. Sci Total Environ. 2018 Jan 15;612:1276-1286. doi:10.1016\/j.scitotenv.2017.09.035. Epub 2017 Sep 8. PubMed PMID: 28898933.see<\/a>.<\/li>\n
  34. Keller J, Imperial J, Ruiz-Arg\u00fceso T, Privet K, Lima O, Michon-Coudouel S, Biget M, Salmon A, A\u00efnouche A, Cabello-Hurtado F. RNA sequencing and analysis of three Lupinus nodulomes provide new insights into specific host-symbiont relationships with compatible and incompatible Bradyrhizobium strains. Plant Sci. 2018 Jan;266:102-116. doi: 10.1016\/j.plantsci.2017.10.015. Epub 2017 Oct 31. PubMed PMID: 29241560.see<\/a>.<\/li>\n
  35. Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengell\u00e9 J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, Guy J, Wincker P, Bouchez O, Klopp C<\/strong>, Dumas B. Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation. BMC Biol. 2018 Apr 18;16(1):43. doi: 10.1186\/s12915-018-0508-5. PubMed PMID: 29669603; PubMed Central PMCID: PMC5907361.see<\/a>.<\/li>\n
  36. Szabo Q, Jost D, Chang JM, Cattoni DI, Papadopoulos GL, Bonev B, Sexton T, Gurgo J, Jacquier C, Nollmann M, Bantignies F, Cavalli G. TADs are 3D structural units of higher-order chromosome organization in Drosophila. Sci Adv. 2018 Feb 28;4(2):eaar8082. doi: 10.1126\/sciadv.aar8082. eCollection 2018 Feb. PubMed PMID: 29503869; PubMed Central PMCID: PMC5829972.see<\/a>.<\/li>\n
  37. Choque E, Klopp C<\/strong>, Valiere S, Raynal J, Mathieu F. Whole-genome sequencing of Aspergillus tubingensis G131 and overview of its secondary metabolism potential. BMC Genomics. 2018 Mar 15;19(1):200. doi: 10.1186\/s12864-018-4574-4. PubMed PMID:29703136.see<\/a>.<\/li>\n
  38. David M, Lebrun C, Duguet T, Talmont F, Beech R, Orlowski S, Andr\u00e9 F, Prichard RK, Lespine A. Structural model, functional modulation by ivermectin and tissue localization of Haemonchus contortus P-glycoprotein-13. Int J Parasitol Drugs Drug Resist. 2018 Apr;8(1):145-157. doi: 10.1016\/j.ijpddr.2018.02.001. Epub 2018 Feb 15. PubMed PMID: 29571165.see<\/a>.<\/li>\n
  39. Bigot D, Atyame CM, Weill M, Justy F, Herniou EA, Gayral P. Discovery of Culex pipiens associated tunisia virus: a new ssRNA(+) virus representing a new insect associated virus family. Virus Evol. 2018 Jan 10;4(1):vex040. doi: 10.1093\/ve\/vex040. eCollection 2018 Jan. PubMed PMID: 29340209; PubMed Central PMCID: PMC5763275.see<\/a>.<\/li>\n
  40. Brener-Raffalli K, Clerissi C, Vidal-Dupiol J, Adjeroud M, Bonhomme F, Pratlong M, Aurelle D, Mitta G, Toulza E. Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato. Microbiome. 2018 Feb 20;6(1):39. doi:10.1186\/s40168-018-0423-6. PubMed PMID: 29463295; PubMed Central PMCID: PMC5819220. see<\/a>.<\/li>\n
  41. Leblois R, Gautier M, Rohfritsch A, Foucaud J, Burban C, Galan M, Loiseau A, Saun\u00e9 L, Branco M, Gharbi K, Vitalis R, Kerdelhu\u00e9 C. Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa. Mol Ecol. 2018 Jan;27(1):264-278. doi:10.1111\/mec.14411. Epub 2017 Nov 29. PubMed PMID: 29113013.see<\/a>.<\/li>\n
  42. Clemente F, Gautier M, Vitalis R. Inferring sex-specific demographic history from SNP data. PLoS Genet. 2018 Jan 31;14(1):e1007191. doi:10.1371\/journal.pgen.1007191. eCollection 2018 Jan. PubMed PMID: 29385127; PubMed Central PMCID: PMC5809101.see<\/a>.<\/li>\n
  43. De Cocker P, Bessiere Y, Hernandez-Raquet G, Dubos S, Mozo I, Gaval G, Caligaris M, Barillon B, Vlaeminck SE, Sperandio M. Enrichment and adaptation yield high anammox conversion rates under low temperatures. Bioresour Technol. 2018 Feb;250:505-512. doi: 10.1016\/j.biortech.2017.11.079. Epub 2017 Nov 24. PubMed PMID: 29197773.see<\/a>.<\/li>\n
  44. Gauthier J, Gayral P, Le Ru BP, Jancek S, Dupas S, Kaiser L, Gyapay G, Herniou EA. Genetic footprints of adaptive divergence in the bracovirus of Cotesia sesamiae identified by targeted resequencing. Mol Ecol. 2018 Mar 30. doi:10.1111\/mec.14574. [Epub ahead of print] PubMed PMID: 29603484.see<\/a>.<\/li>\n
  45. Brucato N, Fernandes V, Mazi\u00e8res S, Kusuma P, Cox MP, Ng’ang’a JW, Omar M, Simeone-Senelle MC, Frassati C, Alshamali F, Fin B, Boland A, Deleuze JF, Stoneking M, Adelaar A, Crowther A, Boivin N, Pereira L, Bailly P, Chiaroni J, Ricaut FX. The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor. Am J Hum Genet. 2018 Jan 4;102(1):58-68. doi:10.1016\/j.ajhg.2017.11.011. PubMed PMID: 29304377; PubMed Central PMCID:PMC5777450.see<\/a>.<\/li>\n
  46. Bruxaux J, Gabrielli M, Ashari H, Pr\u0177s-Jones R, Joseph L, Mil\u00e1 B, Besnard G, Th\u00e9baud C. Recovering the evolutionary history of crowned pigeons (Columbidae: Goura): Implications for the biogeography and conservation of New Guinean lowland birds. Mol Phylogenet Evol. 2018 Mar;120:248-258. doi:10.1016\/j.ympev.2017.11.022. Epub 2017 Dec 1. PubMed PMID: 29199106.see<\/a>.<\/li>\n
  47. Vannier N, Mony C, Bittebiere AK, Michon-Coudouel S, Biget M, Vandenkoornhuyse P. A microorganisms’ journey between plant generations. Microbiome. 2018 Apr 26;6(1):79. doi: 10.1186\/s40168-018-0459-7. PubMed PMID: 29695286; PubMed Central PMCID: PMC5918900.see<\/a>.<\/li>\n
  48. Rahimova R, Fontanel S, Lionne C, Jordheim LP, Peyrottes S, Chaloin L. Identification of allosteric inhibitors of the ecto-5′-nucleotidase (CD73) targeting the dimer interface. PLoS Comput Biol. 2018 Jan 29;14(1):e1005943. doi:10.1371\/journal.pcbi.1005943. eCollection 2018 Jan. PubMed PMID: 29377887; PubMedCentral PMCID: PMC5805337.see<\/a>.<\/li>\n
  49. Coleman RA, Gauffre B, Pavlova A, Beheregaray LB, Kearns J, Lyon J, Sasaki M, Leblois R, Sgro C, Sunnucks P. Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish. Heredity (Edinb). 2018 Jan 12. doi: 10.1038\/s41437-017-0008-3. [Epub ahead of print] PubMed PMID:29326479. see<\/a>.<\/li>\n
  50. Darnaud M, Dos Santos A, Gonzalez P, Augui S, Lacoste C, Desterke C, De Hertogh G, Valentino E, Braun E, Zheng J, Boisgard R, Neut C, Dubuquoy L, Chiappini F, Samuel D, Lepage P, Guerrieri F, Dor\u00e9 J, Br\u00e9chot C, Moniaux N, Faivre J. Enteric Delivery of Regenerating Family Member 3 alpha Alters the Intestinal Microbiota and Controls Inflammation in Mice With Colitis. Gastroenterology. 2018 Mar;154(4):1009-1023.e14. doi: 10.1053\/j.gastro.2017.11.003. Epub 2017 Nov 11. PubMed PMID: 29133078.see<\/a>.<\/li>\n
  51. Lopez D, Ribeiro S, Label P, Fumanal B, Venisse JS, Kohler A, de Oliveira RR, Labutti K, Lipzen A, Lail K, Bauer D, Ohm RA, Barry KW, Spatafora J, Grigoriev IV, Martin FM, Pujade-Renaud V. Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors. Front Microbiol. 2018 Mar 2;9:276. doi:10.3389\/fmicb.2018.00276. eCollection 2018. PubMed PMID: 29551995; PubMed Central PMCID: PMC5840194.see<\/a>.<\/li>\n
  52. Derelle E, Yau S, Moreau H, Grimsley NH. Prasinovirus Attack of Ostreococcus Is Furtive by Day but Savage by Night. J Virol. 2018 Jan 30;92(4). pii: e01703-17. doi: 10.1128\/JVI.01703-17. Print 2018 Feb 15. PubMed PMID: 29187539; PubMed Central PMCID: PMC5790953.see<\/a>.<\/li>\n
  53. Chikhi L, Rodr\u00edguez W, Grusea S, Santos P, Boitard S, Mazet O. The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice. Heredity (Edinb). 2018 Jan;120(1):13-24. doi: 10.1038\/s41437-017-0005-6. Epub 2017 Nov 8. PubMed PMID:29234166; PubMed Central PMCID: PMC5837117.see<\/a><\/li>\n
  54. Fumey J, Hinaux H, Noirot C<\/strong>, Thermes C, R\u00e9taux S, Casane D. Evidence for late Pleistocene origin of Astyanax mexicanus cavefish. BMC Evol Biol. 2018 Apr 18;18(1):43. doi: 10.1186\/s12862-018-1156-7. PubMed PMID: 29665771; PubMed Central PMCID: PMC5905186.see<\/a>.<\/li>\n
  55. Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholom\u00e9 J, Faivre-Rampant P, Kohler A, Lepl\u00e9 JC, Chantret N, Chen J, Di\u00e9vart A, Alaeitabar T, Barbe V, Belser C, Berg\u00e8s H, Bod\u00e9n\u00e8s C, Bogeat-Triboulot MB, Bouffaud ML, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C<\/strong>, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C<\/strong>, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau ML, Luyten I, Madoui MA, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Ru\u00e9 O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A, Salse J. Oak genome reveals facets of long lifespan. Nat Plants. 2018 Jun 18. doi: 10.1038\/s41477-018-0172-3. PubMed PMID: 29915331.see<\/a>.<\/li>\n
  56. Escudi\u00e9 F<\/strong>, Auer L, Bernard M, Mariadassou M, Cauquil L, Vidal K, Maman S, Hernandez-Raquet G, Combes S, Pascal G. FROGS: Find, Rapidly, OTUs with Galaxy Solution. Bioinformatics. 2018 Apr 15;34(8):1287-1294. doi: 10.1093\/bioinformatics\/btx791. PubMed PMID: 29228191.see<\/a>.<\/li>\n
  57. Laguerre S, Gonz\u00e1lez I, Nouaille S, Moisan A, Villa-Vialaneix N, Gaspin C<\/strong>,Bouvier M, Carpousis AJ, Cocaign-Bousquet M, Girbal L. Large-Scale Measurement of mRNA Degradation in Escherichia coli: To Delay or Not to Delay. Methods Enzymol. 2018;612:47-66. doi: 10.1016\/bs.mie.2018.07.003. Epub 2018 Aug 29. PubMed PMID:30502954. see<\/a>.<\/li>\n
  58. Dominguez Del Angel V, Hjerde E, Sterck L, Capella-Gutierrez S, Notredame C, Vinnere Pettersson O, Amselem J, Bouri L, Bocs S, Klopp C<\/strong>, Gibrat JF, Vlasova A, Leskosek BL, Soler L, Binzer-Panchal M, Lantz H. Ten steps to get started in Genome Assembly and Annotation. F1000Res. 2018 Feb 5;7. pii: ELIXIR-148. doi: 10.12688\/f1000research.13598.1. eCollection 2018. PubMed PMID: 29568489; PubMed Central PMCID: PMC5850084.<\/li>\n
  59. Mat AM, Klopp C<\/strong>, Payton L, Jeziorski C, Chalopin M, Amzil Z, Tran D, Wikfors GH, H\u00e9garet H, Soudant P, Huvet A, Fabioux C. Oyster transcriptome response to Alexandrium exposure is related to saxitoxin load and characterized by disrupted digestion, energy balance, and calcium and sodium signaling. Aquat Toxicol. 2018 Jun;199:127-137. doi: 10.1016\/j.aquatox.2018.03.030. Epub 2018 Mar 27. PubMed PMID: 29621672.<\/li>\n
  60. Mondet F, Rau A, Klopp C<\/strong>, Rohmer M, Severac D, Le Conte Y, Alaux C. Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle. BMC Genomics. 2018 May 4;19(1):328. doi: 10.1186\/s12864-018-4668-z. PubMed PMID: 29728057; PubMed Central PMCID: PMC5936029.<\/li>\n
  61. Cabanettes F<\/strong>, Klopp C<\/strong>. D-GENIES: dot plot large genomes in an interactive, efficient and simple way. PeerJ. 2018 Jun 4;6:e4958. doi: 10.7717\/peerj.4958. eCollection 2018. PubMed PMID: 29888139; PubMed Central PMCID: PMC5991294.<\/li>\n
  62. Croville G, Le Loc’h G, Zanchetta C, Manno M, Camus-Bouclainville C, Klopp C<\/strong>, Delverdier M, Lucas MN, Donnadieu C, Delpont M, Gu\u00e9rin JL. Rapid whole-genome based typing and surveillance of avipoxviruses using nanopore sequencing. J Virol Methods. 2018 Nov;261:34-39. doi: 10.1016\/j.jviromet.2018.08.003. Epub 2018 Aug PubMed PMID: 30086381.<\/li>\n
  63. Bertucci A, Pierron F, Gourves PY, Klopp C<\/strong>, Lagarde G, Pereto C, Dufour V, Gonzalez P, Coynel A, Budzinski H, Baudrimont M. Whole-transcriptome response to wastewater treatment plant and stormwater effluents in the Asian clam, Corbicula fluminea. Ecotoxicol Environ Saf. 2018 Dec 15;165:96-106. doi: 10.1016\/j.ecoenv.2018.08.090. Epub 2018 Sep 4. PubMed PMID: 30193169.<\/li>\n
  64. Illikoud N, Klopp C<\/strong>, Roulet A, Bouchez O, Marsaud N, Jaffr\u00e8s E, Zagorec M. One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070. Stand Genomic Sci. 2018 Oct 10;13:22. doi: 10.1186\/s40793-018-0333-z. eCollection 2018. PubMed PMID:30338025; PubMed Central PMCID: PMC6180393.<\/li>\n
  65. Mariette J<\/strong>, Villa-Vialaneix N. Unsupervised multiple kernel learning for heterogeneous data integration. Bioinformatics. 2018 Mar 15;34(6):1009-1015. doi: 10.1093\/bioinformatics\/btx682. PubMed PMID: 29077792.<\/li>\n
  66. de Lima E Silva C, Mariette J<\/strong>, Verweij RA, van Gestel CAM. Assessing the toxicity of thiamethoxam, in natural LUFA 2.2 soil, through three generations of Folsomia candida. Ecotoxicology. 2018 Sep;27(7):764-771. doi:10.1007\/s10646-018-1922-8. Epub 2018 Apr 3. PubMed PMID: 29616379; PubMed Central PMCID: PMC6132986.<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

    Medina, C., da Rocha, M., Magliano, M., Raptopoulo, A., Marteu, N., Lebrigand, K., Abad, P., Favery, B., and Jaubert-Possamai, S.. 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