{"id":19119,"date":"2021-12-18T21:37:01","date_gmt":"2021-12-18T20:37:01","guid":{"rendered":"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/?page_id=19119"},"modified":"2021-12-20T15:30:33","modified_gmt":"2021-12-20T14:30:33","slug":"publications-2-2","status":"publish","type":"page","link":"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/about-us\/publications-2-2-2\/publications-2-2\/","title":{"rendered":"2020"},"content":{"rendered":"

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure \/ Funding \/ Staff members). All Sigenae’s publications<\/a> have used the GenoToul Bioinformatics hardware infrastructure.<\/p>\n

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(1)<\/div>\n
Kusch, S.; Ibrahim, H. M. M.; Zanchetta, C.; Lopez-Roques, C.; Donnadieu, C.; Raffaele, S. A Chromosome-Scale Genome Assembly Resource for Myriosclerotinia Sulcatula<\/i> Infecting Sedge Grass ( Carex<\/i> Sp.). MPMI<\/i> 2020<\/b>, 33<\/i> (7), 880\u2013883. https:\/\/doi.org\/10.1094\/MPMI-03-20-0060-A<\/a>.<\/div>\n<\/div>\n
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(2)<\/div>\n
Rasplus, J.-Y.; Blaimer, B. B.; Brady, S. G.; Burks, R. A.; Delvare, G.; Fisher, N.; Gates, M.; Gauthier, N.; Gumovsky, A. V.; Hansson, C.; Heraty, J. M.; Fusu, L.; Nidelet, S.; Pereira, R. A. S.; Saun\u00e9, L.; Ubaidillah, R.; Cruaud, A. A First Phylogenomic Hypothesis for Eulophidae (Hymenoptera, Chalcidoidea). null<\/i> 2020<\/b>, 54<\/i> (9\u201312), 597\u2013609. https:\/\/doi.org\/10.1080\/00222933.2020.1762941<\/a>.<\/div>\n<\/div>\n
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(3)<\/div>\n
Boyrie, L.; Moreau, C.; Frugier, F.; Jacquet, C.; Bonhomme, M. A Linkage Disequilibrium-Based Statistical Test for Genome-Wide Epistatic Selection Scans in Structured Populations. Heredity<\/i> 2020<\/b>. https:\/\/doi.org\/10.1038\/s41437-020-0349-1<\/a>.<\/div>\n<\/div>\n
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(4)<\/div>\n
Donald, J.; Roy, M.; Suescun, U.; Iribar, A.; Manzi, S.; P\u00e9llissier, L.; Gaucher, P.; Chave, J. A Test of Community Assembly Rules Using Foliar Endophytes from a Tropical Forest Canopy. J Ecol<\/i> 2020<\/b>, 108<\/i> (4), 1605\u20131616. https:\/\/doi.org\/10.1111\/1365-2745.13344<\/a>.<\/div>\n<\/div>\n
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(5)<\/div>\n
Milon, N.; Fuentes Rojas, J.-L.; Castinel, A.; Bigot, L.; Bouwmans, G.; Baudelle, K.; Boutonnet, A.; Gibert, A.; Bouchez, O.; Donnadieu, C.; Ginot, F.; Bancaud, A. A Tunable Filter for High Molecular Weight DNA Selection and Linked-Read Sequencing. Lab Chip<\/i> 2020<\/b>, 20<\/i> (1), 175\u2013184. https:\/\/doi.org\/10.1039\/C9LC00965E<\/a>.<\/div>\n<\/div>\n
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(6)<\/div>\n
Olazcuaga, L.; Loiseau, A.; Parrinello, H.; Paris, M.; Fraimout, A.; Guedot, C.; Diepenbrock, L. M.; Kenis, M.; Zhang, J.; Chen, X.; Borowiec, N.; Facon, B.; Vogt, H.; Price, D. K.; Vogel, H.; Prud\u2019homme, B.; Estoup, A.; Gautier, M. A Whole-Genome Scan for Association with Invasion Success in the Fruit Fly Drosophila Suzukii Using Contrasts of Allele Frequencies Corrected for Population Structure. Molecular Biology and Evolution<\/i> 2020<\/b>, 37<\/i> (8), 2369\u20132385. https:\/\/doi.org\/10.1093\/molbev\/msaa098<\/a>.<\/div>\n<\/div>\n
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(7)<\/div>\n
Leroy, T.; Louvet, J.; Lalanne, C.; Le Provost, G.; Labadie, K.; Aury, J.; Delzon, S.; Plomion, C.; Kremer, A. Adaptive Introgression as a Driver of Local Adaptation to Climate in European White Oaks. New Phytol<\/i> 2020<\/b>, 226<\/i> (4), 1171\u20131182. https:\/\/doi.org\/10.1111\/nph.16095<\/a>.<\/div>\n<\/div>\n
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(8)<\/div>\n
Radhakrishnan, G. V.; Keller, J.; Rich, M. K.; Verni\u00e9, T.; Mbadinga Mbadinga, D. L.; Vigneron, N.; Cottret, L.; Clemente, H. S.; Libourel, C.; Cheema, J.; Linde, A.-M.; Eklund, D. M.; Cheng, S.; Wong, G. K. S.; Lagercrantz, U.; Li, F.-W.; Oldroyd, G. E. D.; Delaux, P.-M. An Ancestral Signalling Pathway Is Conserved in Intracellular Symbioses-Forming Plant Lineages. Nature Plants<\/i> 2020<\/b>, 6<\/i> (3), 280\u2013289. https:\/\/doi.org\/10.1038\/s41477-020-0613-7<\/a>.<\/div>\n<\/div>\n
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(9)<\/div>\n
Dutech, C.; Feau, N.; Lesur, I.; Ehrenmann, F.; Letellier, T.; Li, B.; Mouden, C.; Guichoux, E.; Desprez-Loustau, M. L.; Gross, A. An Easy and Robust Method for Isolation and Validation of Single-Nucleotide Polymorphic Markers from a First Erysiphe Alphitoides Draft Genome. Mycol Progress<\/i> 2020<\/b>, 19<\/i> (6), 615\u2013628. https:\/\/doi.org\/10.1007\/s11557-020-01580-w<\/a>.<\/div>\n<\/div>\n
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(10)<\/div>\n
Jehl, F.; Muret, K.; Bernard, M.; Boutin, M.; Lagoutte, L.; D\u00e9sert, C.; Dehais, P.; Esquerr\u00e9, D.; Acloque, H.; Giuffra, E.; Djebali, S.; Foissac, S.; Derrien, T.; Pitel, F.; Zerjal, T.; Klopp, C.<\/strong>; Lagarrigue, S. An Integrative Atlas of Chicken Long Non-Coding Genes and Their Annotations across 25 Tissues. Sci Rep<\/i> 2020<\/b>, 10<\/i> (1), 20457. https:\/\/doi.org\/10.1038\/s41598-020-77586-x<\/a>.<\/div>\n<\/div>\n
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(11)<\/div>\n
Dardaillon, J.; Dauga, D.; Simion, P.; Faure, E.; Onuma, T. A.; DeBiasse, M. B.; Louis, A.; Nitta, K. R.; Naville, M.; Besnardeau, L.; Reeves, W.; Wang, K.; Fagotto, M.; Gu\u00e9roult-Bellone, M.; Fujiwara, S.; Dumollard, R.; Veeman, M.; Volff, J.-N.; Roest\u00a0Crollius, H.; Douzery, E.; Ryan, J. F.; Davidson, B.; Nishida, H.; Dantec, C.; Lemaire, P. ANISEED 2019: 4D Exploration of Genetic Data for an Extended Range of Tunicates. Nucleic Acids Research<\/i> 2020<\/b>, 48<\/i> (D1), D668\u2013D675. https:\/\/doi.org\/10.1093\/nar\/gkz955<\/a>.<\/div>\n<\/div>\n
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(12)<\/div>\n
Randriamihamison, N.; Vialaneix, N.; Neuvial, P. Applicability and Interpretability of Ward\u2019s Hierarchical Agglomerative Clustering With or Without Contiguity Constraints. Journal of Classification<\/i> 2020<\/b>. https:\/\/doi.org\/10.1007\/s00357-020-09377-y<\/a>.<\/div>\n<\/div>\n
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(13)<\/div>\n
Chambers, E. A.; Hebert, P. D. N. Assessing DNA Barcodes for Species Identification in North American Reptiles and Amphibians in Natural History Collections. PLoS One<\/i> 2016<\/b>, 11<\/i> (4), e0154363. https:\/\/doi.org\/10.1371\/journal.pone.0154363<\/a>.<\/div>\n<\/div>\n
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(14)<\/div>\n
Reverter, A.; Vitezica, Z. G.; Naval-S\u00e1nchez, M.; Henshall, J.; Raidan, F. S. S.; Li, Y.; Meyer, K.; Hudson, N. J.; Porto-Neto, L. R.; Legarra, A. Association Analysis of Loci Implied in \u201cBuffering\u201d Epistasis. Journal of Animal Science<\/i> 2020<\/b>, 98<\/i> (skaa045). https:\/\/doi.org\/10.1093\/jas\/skaa045<\/a>.<\/div>\n<\/div>\n
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(15)<\/div>\n
Macedo, F. L.; Reverter, A.; Legarra, A. Behavior of the Linear Regression Method to Estimate Bias and Accuracies with Correct and Incorrect Genetic Evaluation Models. Journal of Dairy Science<\/i> 2020<\/b>, 103<\/i> (1), 529\u2013544. https:\/\/doi.org\/10.3168\/jds.2019-16603<\/a>.<\/div>\n<\/div>\n
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(16)<\/div>\n
Macedo, F. L.; Christensen, O. F.; Astruc, J.-M.; Aguilar, I.; Masuda, Y.; Legarra, A. Bias and Accuracy of Dairy Sheep Evaluations Using BLUP and SSGBLUP with Metafounders and Unknown Parent Groups. Genetics Selection Evolution<\/i> 2020<\/b>, 52<\/i> (1), 47. https:\/\/doi.org\/10.1186\/s12711-020-00567-1<\/a>.<\/div>\n<\/div>\n
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(17)<\/div>\n
Joulian, C.; Fonti, V.; Chapron, S.; Bryan, C. G.; Guezennec, A.-G. Bioleaching of Pyritic Coal Wastes: Bioprospecting and Efficiency of Selected Consortia. Research in Microbiology<\/i> 2020<\/b>, 171<\/i> (7), 260\u2013270. https:\/\/doi.org\/10.1016\/j.resmic.2020.08.002<\/a>.<\/div>\n<\/div>\n
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(18)<\/div>\n
Mat, A. M.; Sarrazin, J.; Markov, G. V.; Apremont, V.; Dubreuil, C.; Ech\u00e9, C.; Fabioux, C.; Klopp, C<\/strong>.; Sarradin, P.-M.; Tanguy, A.; Huvet, A.; Matabos, M. Biological Rhythms in the Deep-Sea Hydrothermal Mussel Bathymodiolus Azoricus. Nat Commun<\/i> 2020<\/b>, 11<\/i> (1), 3454. https:\/\/doi.org\/10.1038\/s41467-020-17284-4<\/a>.<\/div>\n<\/div>\n
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(19)<\/div>\n
Feron, R.; Zahm, M.; Cabau, C.; Klopp, C.<\/strong>; Roques, C.; Bouchez, O.; Ech\u00e9, C.; Vali\u00e8re, S.; Donnadieu, C.; Haffray, P.; Bestin, A.; Morvezen, R.; Acloque, H.; Euclide, P. T.; Wen, M.; Jouano, E.; Schartl, M.; Postlethwait, J. H.; Schraidt, C.; Christie, M. R.; Larson, W. A.; Herpin, A.; Guiguen, Y. Characterization of a Y\u2010specific Duplication\/Insertion of the Anti\u2010Mullerian Hormone Type II Receptor Gene Based on a Chromosome\u2010scale Genome Assembly of Yellow Perch, Perca Flavescens<\/i>. Mol Ecol Resour<\/i> 2020<\/b>, 20<\/i> (2), 531\u2013543. https:\/\/doi.org\/10.1111\/1755-0998.13133<\/a>.<\/div>\n<\/div>\n
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(20)<\/div>\n
Miyauchi, S.; Hage, H.; Drula, E.; Lesage-Meessen, L.; Berrin, J.-G.; Navarro, D.; Favel, A.; Chaduli, D.; Grisel, S.; Haon, M.; Piumi, F.; Levasseur, A.; Lomascolo, A.; Ahrendt, S.; Barry, K.; LaButti, K. M.; Chevret, D.; Daum, C.; Mariette, J.<\/strong>; Klopp, C.<\/strong>; Cullen, D.; de Vries, R. P.; Gathman, A. C.; Hainaut, M.; Henrissat, B.; Hild\u00e9n, K. S.; K\u00fces, U.; Lilly, W.; Lipzen, A.; M\u00e4kel\u00e4, M. R.; Martinez, A. T.; Morel-Rouhier, M.; Morin, E.; Pangilinan, J.; Ram, A. F. J.; W\u00f6sten, H. A. B.; Ruiz-Due\u00f1as, F. J.; Riley, R.; Record, E.; Grigoriev, I. V.; Rosso, M.-N. Conserved White-Rot Enzymatic Mechanism for Wood Decay in the Basidiomycota Genus Pycnoporus. DNA Research<\/i> 2020<\/b>, 27<\/i> (2), dsaa011. https:\/\/doi.org\/10.1093\/dnares\/dsaa011<\/a>.<\/div>\n<\/div>\n
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(21)<\/div>\n
Policarpo, M.; Fumey, J.; Lafargeas, P.; Naquin, D.; Thermes, C.; Naville, M.; Dechaud, C.; Volff, J.-N.; Cabau, C.; Klopp, C.<\/strong>; M\u00f8ller, P. R.; Bernatchez, L.; Garc\u00eda-Machado, E.; R\u00e9taux, S.; Casane, D. Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals. Molecular Biology and Evolution<\/i> 2020<\/b>, msaa249. https:\/\/doi.org\/10.1093\/molbev\/msaa249<\/a>.<\/div>\n<\/div>\n
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(22)<\/div>\n
Mussard, E.; Pouzet, C.; Helies, V.; Pascal, G.; Fourre, S.; Cherbuy, C.; Rubio, A.; Vergnolle, N.; Combes, S.; Beaumont, M. Culture of Rabbit Caecum Organoids by Reconstituting the Intestinal Stem Cell Niche in Vitro with Pharmacological Inhibitors or L-WRN Conditioned Medium. Stem Cell Research<\/i> 2020<\/b>, 48<\/i>, 101980. https:\/\/doi.org\/10.1016\/j.scr.2020.101980<\/a>.<\/div>\n<\/div>\n
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(23)<\/div>\n
Payton, L.; Noirot, C.<\/strong>; Hoede, C.<\/strong>; H\u00fcppe, L.; Last, K.; Wilcockson, D.; Ershova, E. A.; Vali\u00e8re, S.; Meyer, B. Daily Transcriptomes of the Copepod Calanus Finmarchicus during the Summer Solstice at High Arctic Latitudes. Scientific Data<\/i> 2020<\/b>, 7<\/i> (1), 415. https:\/\/doi.org\/10.1038\/s41597-020-00751-4<\/a>.<\/div>\n<\/div>\n
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(24)<\/div>\n
Rougemont, Q.; Moore, J.-S.; Leroy, T.; Normandeau, E.; Rondeau, E. B.; Withler, R. E.; Van Doornik, D. M.; Crane, P. A.; Naish, K. A.; Garza, J. C.; Beacham, T. D.; Koop, B. F.; Bernatchez, L. Demographic History Shaped Geographical Patterns of Deleterious Mutation Load in a Broadly Distributed Pacific Salmon. PLoS Genet<\/i> 2020<\/b>, 16<\/i> (8), e1008348. https:\/\/doi.org\/10.1371\/journal.pgen.1008348<\/a>.<\/div>\n<\/div>\n
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(25)<\/div>\n
mariadassou, M.; Ramayo\u2010Caldas, Y.; Charles, M.; F\u00e9m\u00e9nia, M.; Renand, G.; Rocha, D. Detection of Selection Signatures in Limousin Cattle Using Whole\u2010genome Resequencing. Anim Genet<\/i> 2020<\/b>, 51<\/i> (5), 815\u2013819. https:\/\/doi.org\/10.1111\/age.12982<\/a>.<\/div>\n<\/div>\n
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(26)<\/div>\n
Teyssier, A.; Matthysen, E.; Hudin, N. S.; de Neve, L.; White, J.; Lens, L. Diet Contributes to Urban-Induced Alterations in Gut Microbiota: Experimental Evidence from a Wild Passerine. Proceedings of the Royal Society B: Biological Sciences<\/i> 2020<\/b>, 287<\/i> (1920), 20192182. https:\/\/doi.org\/10.1098\/rspb.2019.2182<\/a>.<\/div>\n<\/div>\n
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(27)<\/div>\n
Grimm, P.; Combes, S.; Pascal, G.; Cauquil, L.; Julliand, V. Dietary Composition and Yeast\/Microalgae Combination Supplementation Modulate the Microbial Ecosystem in the Caecum, Colon and Faeces of Horses. British Journal of Nutrition<\/i> 2020<\/b>, 123<\/i> (4), 372\u2013382. https:\/\/doi.org\/10.1017\/S0007114519002824<\/a>.<\/div>\n<\/div>\n
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(28)<\/div>\n
Sow, A.; Haran, J.; Benoit, L.; Galan, M.; Br\u00e9vault, T. DNA Metabarcoding as a Tool for Disentangling Food Webs in Agroecosystems. Insects<\/i> 2020<\/b>, 11<\/i> (5), 294. https:\/\/doi.org\/10.3390\/insects11050294<\/a>.<\/div>\n<\/div>\n
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(29)<\/div>\n
\u017barski, D.; Le Cam, A.; Nynca, J.; Klopp, C.<\/strong>; Ciesielski, S.; Sarosiek, B.; Montfort, J.; Kr\u00f3l, J.; Fontaine, P.; Ciereszko, A.; Bobe, J. Domestication Modulates the Expression of Genes Involved in Neurogenesis in High\u2010quality Eggs of Sander Lucioperca<\/i>. Mol Reprod Dev<\/i> 2020<\/b>, 87<\/i> (9), 934\u2013951. https:\/\/doi.org\/10.1002\/mrd.23414<\/a>.<\/div>\n<\/div>\n
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(30)<\/div>\n
Pa\u00ebs, C.; Gidenne, T.; B\u00e9bin, K.; Duperray, J.; Gohier, C.; Guen\u00e9-Grand, E.; Rebours, G.; Bouchez, O.; Barilly, C.; Aymard, P.; Combes, S. Early Introduction of Solid Feeds: Ingestion Level Matters More Than Prebiotic Supplementation for Shaping Gut Microbiota. Frontiers in Veterinary Science<\/i> 2020<\/b>, 7<\/i>, 261. https:\/\/doi.org\/10.3389\/fvets.2020.00261<\/a>.<\/div>\n<\/div>\n
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(31)<\/div>\n
Garcia-Baccino, C. A.; Lourenco, D. A. L.; Miller, S.; Cantet, R. J. C.; Vitezica, Z. G. Estimating Dominance Genetic Variances for Growth Traits in American Angus Males Using Genomic Models. Journal of Animal Science<\/i> 2020<\/b>, 98<\/i> (1), skz384. https:\/\/doi.org\/10.1093\/jas\/skz384<\/a>.<\/div>\n<\/div>\n
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(32)<\/div>\n
Jallet, A. J.; Le Rouzic, A.; Genissel, A. Evolution and Plasticity of the Transcriptome Under Temperature Fluctuations in the Fungal Plant Pathogen Zymoseptoria Tritici. Frontiers in Microbiology<\/i> 2020<\/b>, 11<\/i>, 2180. https:\/\/doi.org\/10.3389\/fmicb.2020.573829<\/a>.<\/div>\n<\/div>\n
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(33)<\/div>\n
Baksay, S.; Pornon, A.; Burrus, M.; Mariette, J.<\/strong>; Andalo, C.; Escaravage, N. Experimental Quantification of Pollen with DNA Metabarcoding Using ITS1 and TrnL. Scientific Reports<\/i> 2020<\/b>, 10<\/i> (1), 4202. https:\/\/doi.org\/10.1038\/s41598-020-61198-6<\/a>.<\/div>\n<\/div>\n
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(34)<\/div>\n
Rasplus, J.; Rodriguez, L. J.; Saun\u00e9, L.; Peng, Y.; Bain, A.; Kjellberg, F.; Harrison, R. D.; Pereira, R. A. S.; Ubaidillah, R.; Tollon\u2010Cordet, C.; Gautier, M.; Rossi, J.; Cruaud, A. Exploring Systematic Biases, Rooting Methods and Morphological Evidence to Unravel the Evolutionary History of the Genus Ficus<\/i> (Moraceae). Cladistics<\/i> 2020<\/b>, cla.12443. https:\/\/doi.org\/10.1111\/cla.12443<\/a>.<\/div>\n<\/div>\n
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(35)<\/div>\n
Granado-Tajada, I.; Legarra, A.; Ugarte, E. Exploring the Inclusion of Genomic Information and Metafounders in Latxa Dairy Sheep Genetic Evaluations. Journal of Dairy Science<\/i> 2020<\/b>, 103<\/i> (7), 6346\u20136353. https:\/\/doi.org\/10.3168\/jds.2019-18033<\/a>.<\/div>\n<\/div>\n
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(36)<\/div>\n
Magro, A.; Lecompte, E.; Hemptinne, J.-L.; Soares, A. O.; Dutrillaux, A.-M.; Murienne, J.; F\u00fcrsch, H.; Dutrillaux, B. First Case of Parthenogenesis in Ladybirds (Coleoptera: Coccinellidae) Suggests New Mechanisms for the Evolution of Asexual Reproduction. Journal of Zoological Systematics and Evolutionary Research<\/i> 2020<\/b>, 58<\/i> (1), 194\u2013208. https:\/\/doi.org\/10.1111\/jzs.12339<\/a>.<\/div>\n<\/div>\n
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(37)<\/div>\n
Chateigner, A.; Lesage-Descauses, M.-C.; Rogier, O.; Jorge, V.; Lepl\u00e9, J.-C.; Brunaud, V.; Roux, C. P.-L.; Soubigou-Taconnat, L.; Martin-Magniette, M.-L.; Sanchez, L.; Segura, V. Gene Expression Predictions and Networks in Natural Populations Supports the Omnigenic Theory. BMC Genomics<\/i> 2020<\/b>, 21<\/i> (1), 416. https:\/\/doi.org\/10.1186\/s12864-020-06809-2<\/a>.<\/div>\n<\/div>\n
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(38)<\/div>\n
Go\u00f1i-Urriza, M.; Klopp, C.<\/strong>; Ranchou-Peyruse, M.; Ranchou-Peyruse, A.; Monperrus, M.; Khalfaoui-Hassani, B.; Guyoneaud, R. Genome Insights of Mercury Methylation among Desulfovibrio and Pseudodesulfovibrio Strains. Research in Microbiology<\/i> 2020<\/b>, 171<\/i> (1), 3\u201312. https:\/\/doi.org\/10.1016\/j.resmic.2019.10.003<\/a>.<\/div>\n<\/div>\n
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(39)<\/div>\n
Takehana, Y.; Zahm, M.; Cabau, C.; Klopp, C.<\/strong>; Roques, C.; Bouchez, O.; Donnadieu, C.; Barrachina, C.; Journot, L.; Kawaguchi, M.; Yasumasu, S.; Ansai, S.; Naruse, K.; Inoue, K.; Shinzato, C.; Schartl, M.; Guiguen, Y.; Herpin, A. Genome Sequence of the Euryhaline Javafish Medaka, Oryzias Javanicus<\/i>\u202f: A Small Aquarium Fish Model for Studies on Adaptation to Salinity. G3<\/i> 2020<\/b>, 10<\/i> (3), 907\u2013915. https:\/\/doi.org\/10.1534\/g3.119.400725<\/a>.<\/div>\n<\/div>\n
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(40)<\/div>\n
Phan, N. T.; Orjuela, J.; Danchin, E. G. J.; Klopp, C.; Perfus\u2010Barbeoch, L.; Kozlowski, D. K.; Koutsovoulos, G. D.; Lopez\u2010Roques, C.; Bouchez, O.; Zahm, M.; Besnard, G.; Bellafiore, S. Genome Structure and Content of the Rice Root\u2010knot Nematode ( Meloidogyne Graminicola<\/i> ). Ecol Evol<\/i> 2020<\/b>, 10<\/i> (20), 11006\u201311021. https:\/\/doi.org\/10.1002\/ece3.6680<\/a>.<\/div>\n<\/div>\n
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(41)<\/div>\n
Talouarn, E.; Bardou, P.; Palhi\u00e8re, I.; Oget, C.; Cl\u00e9ment, V.; Tosser-Klopp, G.; Rupp, R.; Robert-Grani\u00e9, C.; The VarGoats Consortium. Genome Wide Association Analysis on Semen Volume and Milk Yield Using Different Strategies of Imputation to Whole Genome Sequence in French Dairy Goats. BMC Genetics<\/i> 2020<\/b>, 21<\/i> (1), 19. https:\/\/doi.org\/10.1186\/s12863-020-0826-9<\/a>.<\/div>\n<\/div>\n
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(42)<\/div>\n
Ibrahim, H. M. M.; Kusch, S.; Didelon, M.; Raffaele, S. Genome\u2010wide Alternative Splicing Profiling in the Fungal Plant Pathogen Sclerotinia Sclerotiorum<\/i> during the Colonization of Diverse Host Families. Mol Plant Pathol<\/i> 2020<\/b>, mpp.13006. https:\/\/doi.org\/10.1111\/mpp.13006<\/a>.<\/div>\n<\/div>\n
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(43)<\/div>\n
Willemsen, A.; van den Boom, A.; Dietz, J.; Bilge Dagalp, S.; Dogan, F.; Bravo, I. G.; Ehrhardt, A.; Ehrke-Schulz, E. Genomic and Phylogenetic Characterization of ChPV2, a Novel Goat PV Closely Related to the Xi-PV1 Species Infecting Bovines. Virol J<\/i> 2020<\/b>, 17<\/i> (1), 167. https:\/\/doi.org\/10.1186\/s12985-020-01440-9<\/a>.<\/div>\n<\/div>\n
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(44)<\/div>\n
Salem, E.; Dhanasekaran, V.; Cassard, H.; Hause, B.; Maman, S.; Meyer, G.; Ducatez, M. F. Global Transmission, Spatial Segregation, and Recombination Determine the Long-Term Evolution and Epidemiology of Bovine Coronaviruses. Viruses<\/i> 2020<\/b>, 12<\/i> (5), 534. https:\/\/doi.org\/10.3390\/v12050534<\/a>.<\/div>\n<\/div>\n
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(45)<\/div>\n
Beaumont, M.; Pa\u00ebs, C.; Mussard, E.; Knudsen, C.; Cauquil, L.; Aymard, P.; Barilly, C.; Gabinaud, B.; Zemb, O.; Fourre, S.; Gautier, R.; Lencina, C.; Eutam\u00e8ne, H.; Theodorou, V.; Canlet, C.; Combes, S. Gut Microbiota Derived Metabolites Contribute to Intestinal Barrier Maturation at the Suckling-to-Weaning Transition. null<\/i> 2020<\/b>, 11<\/i> (5), 1268\u20131286. https:\/\/doi.org\/10.1080\/19490976.2020.1747335<\/a>.<\/div>\n<\/div>\n
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(46)<\/div>\n
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Perrier, F.; Bertucci, A.; Pierron, F.; Feurtet\u2010Mazel, A.; Simon, O.; Klopp, C.<\/strong>; Candaudap, F.; Pokrovski, O.; Etcheverria, B.; Mornet, S.; Baudrimont, M. Transfer and Transcriptomic Profiling in Liver and Brain of European Eels ( Anguilla Anguilla<\/i> ) After Diet\u2010borne Exposure to Gold Nanoparticles. Environ Toxicol Chem<\/i> 2020<\/b>, 39<\/i> (12), 2450\u20132461. https:\/\/doi.org\/10.1002\/etc.4858<\/a>.<\/div>\n<\/div>\n
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Capt, C.; Bouvet, K.; Guerra, D.; Robicheau, B. M.; Stewart, D. T.; Pante, E.; Breton, S. Unorthodox Features in Two Venerid Bivalves with Doubly Uniparental Inheritance of Mitochondria. Sci Rep<\/i> 2020<\/b>, 10<\/i> (1), 1087. https:\/\/doi.org\/10.1038\/s41598-020-57975-y<\/a>.<\/div>\n<\/div>\n
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Clerissi, C.; Guillou, L.; Escoubas, J.-M.; Toulza, E. Unveiling Protist Diversity Associated with the Pacific Oyster Crassostrea Gigas Using Blocking and Excluding Primers. BMC Microbiology<\/i> 2020<\/b>, 20<\/i> (1), 193. https:\/\/doi.org\/10.1186\/s12866-020-01860-1<\/a>.<\/div>\n<\/div>\n
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Khimoun, A.; Doums, C.; Molet, M.; Kaufmann, B.; Peronnet, R.; Eyer, P. A.; Mona, S. Urbanization without Isolation: The Absence of Genetic Structure among Cities and Forests in the Tiny Acorn Ant Temnothorax Nylanderi. Biol Lett<\/i> 2020<\/b>, 16<\/i> (1), 20190741. https:\/\/doi.org\/10.1098\/rsbl.2019.0741<\/a>.<\/div>\n<\/div>\n
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Talouarn, E.; Teissier, M.; Bardou, P.; Larroque, H.; Cl\u00e9ment, V.; Palhi\u00e8re, I.; Tosser-Klopp, G.; Rupp, R.; Robert-Grani\u00e9, C. Using Sequence Variants of a QTL Region Improves the Accuracy of Genomic Evaluation in French Saanen Goats. Journal of Dairy Science<\/i> 2020<\/b>. https:\/\/doi.org\/10.3168\/jds.2020-18837<\/a>.<\/div>\n<\/div>\n
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Muranty, H.; Denanc\u00e9, C.; Feugey, L.; Cr\u00e9pin, J.-L.; Barbier, Y.; Tartarini, S.; Ordidge, M.; Troggio, M.; Lateur, M.; Nybom, H.; Paprstein, F.; Laurens, F.; Durel, C.-E. Using Whole-Genome SNP Data to Reconstruct a Large Multi-Generation Pedigree in Apple Germplasm. BMC Plant Biol<\/i> 2020<\/b>, 20<\/i> (1), 2. https:\/\/doi.org\/10.1186\/s12870-019-2171-6<\/a>.<\/div>\n<\/div>\n
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Touchard, A.; Aili, S. R.; T\u00e9n\u00e9, N.; Barass\u00e9, V.; Klopp, C.<\/strong>; Dejean, A.; Kini, R. M.; Mrinalini; Coquet, L.; Jouenne, T.; Lefranc, B.; Leprince, J.; Escoubas, P.; Nicholson, G. M.; Treilhou, M.; Bonnaf\u00e9, E. Venom Peptide Repertoire of the European Myrmicine Ant Manica Rubida<\/i>\u202f: Identification of Insecticidal Toxins. J. Proteome Res.<\/i> 2020<\/b>, 19<\/i> (4), 1800\u20131811. https:\/\/doi.org\/10.1021\/acs.jproteome.0c00048<\/a>.<\/div>\n<\/div>\n
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Yau, S.; Krasovec, M.; Benites, L. F.; Rombauts, S.; Groussin, M.; Vancaester, E.; Aury, J.-M.; Derelle, E.; Desdevises, Y.; Escande, M.-L.; Grimsley, N.; Guy, J.; Moreau, H.; Sanchez-Brosseau, S.; van de Peer, Y.; Vandepoele, K.; Gourbiere, S.; Piganeau, G. Virus-Host Coexistence in Phytoplankton through the Genomic Lens. Sci. Adv.<\/i> 2020<\/b>, 6<\/i> (14), eaay2587. https:\/\/doi.org\/10.1126\/sciadv.aay2587<\/a>.<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure \/ Funding \/ Staff members). All Sigenae’s publications have used the GenoToul Bioinformatics hardware infrastructure. 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