{"id":1339,"date":"2016-07-20T16:38:49","date_gmt":"2016-07-20T14:38:49","guid":{"rendered":"http:\/\/vm-bioinfo-wp.toulouse.inra.fr\/?page_id=1339"},"modified":"2023-01-10T15:09:01","modified_gmt":"2023-01-10T14:09:01","slug":"galaxy-training","status":"publish","type":"page","link":"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/training-2\/galaxy-training\/","title":{"rendered":"Galaxy training"},"content":{"rendered":"<p><img decoding=\"async\" loading=\"lazy\" class=\"alignleft wp-image-1870\" src=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/wp-content\/uploads\/galaxy.jpeg\" alt=\"galaxy\" width=\"100\" height=\"100\" \/><\/p>\n<p class=\"bodytext\" style=\"text-align: justify;\">\u00a0 The <b>GenoToul bioinformatics<\/b> <b>platform<\/b>, <b>Sigenae <\/b>and <b>SaAB (MIAT)<\/b> offers a catalog of training sessions. If you need bio-informatic training on tools which are not covered in the existing catalog please feel free to <a class=\"internal-link\" href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/help\/support\/\">contact us<\/a> (please add &#8220;Request for training&#8221; in the subject of your demand). For example we have supports for a training presenting, sequence alignment, tree construction to define subfamilies and patterns or profiles detection in sequences. To get all administrative information have a look at the <a class=\"internal-link\" href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/pricing\">pricing<\/a> page. If you need administrative help please contact: <strong><a class=\"mail\" href=\"mailto:formation-pfbioinfo@inrae.fr?subject=[Bioinfo Genotoul] Register to command line training waiting list\">formation-pfbioinfo(at)inrae.fr<\/a><\/strong>. For people working at INRAE &#8216;Toulouse center&#8217;, the INRAE &#8216;Formation permanente de Toulouse&#8217; (FP) service can partially fund the cost of training sessions. To benefit from FP funding,\u00a0 you have to ask the FP the training request form, fill it and return it to\u00a0 <a href=\"mailto:fp-toulouse@inrae.fr\" target=\"_blank\" rel=\"noopener noreferrer\">fp-toulouse(at)inrae.fr<\/a> signed by the lab&#8217;s training correspondent and the lab director so that the FP can study the\u00a0 amount to fund\u00a0 and ensure administrative follow-up.<\/p>\n<p><span style=\"color: #993366;\"><strong>Participating to one of our training does not entitle you to open an account.<\/strong><\/span><\/p>\n<p>Others bioinformatics core facilities provided bioinformatics training, please have a look to <a href=\"https:\/\/www.france-bioinformatique.fr\/fr\/formations\">Institut Fran\u00e7ais de Bionformatique<\/a> (IFB) or at <a href=\"https:\/\/www.sfbi.fr\/programs\/2\">SFBI &#8211; formation<\/a>.<\/p>\n<p style=\"text-align: justify;\">The training material are in English but the training will be delivered in French. Some courses are available on the <a href=\"https:\/\/elearning.formation-permanente.inra.fr\/course\/index.php?categoryid=40\">INRA e-learning Platform<\/a> (please connect with your INRA LDAP login\/password).<\/p>\n<p style=\"text-align: justify;\">The Sigenae Bioinfo Genotoul Galaxy instance is available here : <a href=\"http:\/\/sigenae-workbench.toulouse.inra.fr\">Galaxy instance<\/a> (please connect with your genotoul LDAP login\/password.).<\/p>\n<div class=\"em-view-container\" id=\"em-view-488062646\" data-view=\"list\">\r\n\t<div class=\"em-list em-events-list\" id=\"em-events-list-488062646\" data-view-id=\"488062646\">\r\n\t<table cellpadding=\"0\" cellspacing=\"0\">\r\n    <thead>\r\n        <tr>\r\n                        <th class=\"event-description\">\u00c9v\u00e9nement<\/th>\r\n\t\t\t<th class=\"event-time\" >Date \/ Heure<\/th>\r\n\t                <th class=\"event-time\">Organizers<\/th>\r\n                        <th class=\"event-time\" >Vacancies<\/th>\r\n                        <th class=\"event-time\" >Registration<\/th> \r\n\t\t\t\r\n\t\t<\/tr>\r\n   \t<\/thead>\r\n    <tbody><tr>\r\n            <td>\r\n                <a href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/events\/rnaseq-alignment-and-transcripts-assemblies-with-galaxy\/\">RNAseq alignment, quantification and transcript discovery with Galaxy<\/a>         \r\n             <\/td>\r\n\t    <td >\r\n            \r\n            -\r\n            \r\n            <\/td>\r\n             \r\n            <td>\r\n             S. Maman, C. Cabau\r\n             <\/td>\r\n             <td>\r\n            \r\n            -\r\n            \r\n             <\/td>\r\n             <td>\r\n             \r\n            -\r\n            \r\n               <\/td>\r\n        <\/tr><tr>\r\n            <td>\r\n                <a href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/events\/first-step-with-galaxy\/\">First step with galaxy<\/a>         \r\n             <\/td>\r\n\t    <td >\r\n            \r\n            -\r\n            \r\n            <\/td>\r\n             \r\n            <td>\r\n             S. Maman, S. Rodriguez\r\n             <\/td>\r\n             <td>\r\n            \r\n            -\r\n            \r\n             <\/td>\r\n             <td>\r\n             \r\n            -\r\n            \r\n               <\/td>\r\n        <\/tr><tr>\r\n            <td>\r\n                <a href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/events\/galaxy-initiation-rnaseq-sartools\/\">Galaxy initiation, RNAseq, SARTools<\/a>         \r\n             <\/td>\r\n\t    <td >\r\n            \r\n            -\r\n            \r\n            <\/td>\r\n             \r\n            <td>\r\n             \r\n             <\/td>\r\n             <td>\r\n            \r\n            -\r\n            \r\n             <\/td>\r\n             <td>\r\n             \r\n            -\r\n            \r\n               <\/td>\r\n        <\/tr><tr>\r\n            <td>\r\n                <a href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/events\/reads-alignment-small-size-variants-calling-galaxy\/\">Reads alignment and small size variants calling with Galaxy<\/a>         \r\n             <\/td>\r\n\t    <td >\r\n            \r\n            -\r\n            \r\n            <\/td>\r\n             \r\n            <td>\r\n             P. Bardou, S. Maman, S. Rodriguez\r\n             <\/td>\r\n             <td>\r\n            \r\n            -\r\n            \r\n             <\/td>\r\n             <td>\r\n             \r\n            -\r\n            \r\n               <\/td>\r\n        <\/tr><tr>\r\n            <td>\r\n                <a href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/events\/metagenomic-amplicons-and-stats-with-frogs\/\">FROGS formation : tools for bioinformatics and statistics analyses with amplicon metagenomics data<\/a>         \r\n             <\/td>\r\n\t    <td >\r\n            \r\n            -\r\n            \r\n            <\/td>\r\n             \r\n            <td>\r\n             G. Pascal, L. Auer, <br>(NED\/GenPhySE, IAM - INRAE Nancy)\r\n             <\/td>\r\n             <td>\r\n            \r\n            -\r\n            \r\n             <\/td>\r\n             <td>\r\n             \r\n            -\r\n            \r\n               <\/td>\r\n        <\/tr><\/tbody><\/table>\t<\/div>\r\n<\/div>\n<p><strong>To subscribe into a waiting list or if you need one of our training to be scheduled please send an email to <a class=\"mail\" href=\"mailto:formation-pfbioinfo@inra.fr?subject=[Bioinfo Genotoul] Register to command line training waiting list\">formation-pfbioinfo(at)inra.fr<\/a>.<\/strong><\/p>\n<p><strong>\u00a0<\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u00a0 The GenoToul bioinformatics platform, Sigenae and SaAB (MIAT) offers a catalog of training sessions. If you need bio-informatic training on tools which are not covered in the existing catalog please feel free to&#46;&#46;&#46;<\/p>\n","protected":false},"author":5,"featured_media":0,"parent":2211,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"page-templates\/child-menu.php","meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Galaxy training - genotoul-bioinfo-UPDATE<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/training-2\/galaxy-training\/\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/training-2\/galaxy-training\/\",\"url\":\"https:\/\/vm-bioinfo-wp.toulouse.inrae.fr\/genotoul_test_update\/index.php\/training-2\/galaxy-training\/\",\"name\":\"Galaxy training - 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